PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00593.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 282aa    MW: 31854.8 Da    PI: 6.5084
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00593.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT eEd++l+d+++ +G+g+W+t ++  g+ R++k+c++rw +yl
  Rsa1.0_00593.1_g00019.1 14 KGPWTSEEDQKLIDYIRFYGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                             79********************************************97 PP

2Myb_DNA-binding54.33e-1767111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rgr++ eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++
  Rsa1.0_00593.1_g00019.1  67 RGRFSFEEEETIIQLHSVMGNK-WSAIAARLP-GRTDNEIKNHWNTH 111
                              89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.158961IPR017930Myb domain
SuperFamilySSF466892.92E-3111108IPR009057Homeodomain-like
SMARTSM007178.4E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001672.99E-121661No hitNo description
PROSITE profilePS5129425.80462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2765117IPR009057Homeodomain-like
SMARTSM007172.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567111IPR001005SANT/Myb domain
CDDcd001671.87E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010200Biological Processresponse to chitin
GO:0016049Biological Processcell growth
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080091Biological Processregulation of raffinose metabolic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRSPCCDKN GVKKGPWTSE EDQKLIDYIR FYGPGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVMGNKWS AIAARLPGRT DNEIKNHWNT HIRKRLVRSG  120
IDPVTHSPRF DLLYISSLLA VLINQPNFSS VATHASSLLH PDVLRLASLL LPPQQPLQNF  180
NPIHEPNLDQ NIQTPITSVS SQDSQPQAEC TTPSNNEATY FDPVNARVEG HADLLPPLSE  240
SFDLESLMST PQQNSIEAGA NSSSFFDFGF PDNFTFEDFM LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31141167108B-MYB
1h8a_C4e-311411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00457DAPTransfer from AT4G28110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894410.0AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137761.11e-175PREDICTED: transcription repressor MYB6-like isoform X1
SwissprotQ8GWP09e-71MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A0D3DGI81e-175A0A0D3DGI8_BRAOL; Uncharacterized protein
STRINGBra026281.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-137myb domain protein 41